As every approach and every set up is different due to the sample, used method etc., there are of course not the guidelines.
But anyhow, to use a common strategy for all partners and to allow compareability of results please take a look on the SOPs recommended below...
In general:
Some rather general considerations concerning proteomics are to be found in Hamacher Meyer.pdf
Human body fluids:
SOPs according to the guidelines generated by Jens Wiltfang & Piotr Lewczuk, Erlangen-Nuermberg within the Dementia Network.
Checklist pre-analytical sample handling.pdf
Protocol for CSF collecting.pdf
Protocol for serum, plasma, blood collecting.pdf
Protocol for shipment.pdf
View of matrix box.pdf
Sample preparation 2D-PAGE:
SOP according to Jochim Klose's paper...
Preparation of Protein Samples from Mouse and Human Tissues for 2-D Electrophoresis.pdf
Human brain tissue:
Related to disease groups the Brain-Net Europe (organized by H. Kretzschmar, Munich) recommends the following procedures:
Dementia:
Dementia protocols (pdf, 17 k)
Depression and Schizophrenia:
Section protocol (pdf, 57 k) & Regions of interest (pdf, 55 k)
Motor Neurone Disease:
Motor neurone disease protocols (pdf, 25 k)
Neuro-degenerative Diseases:
Neuro degenerative disease protocols (pdf, 12 k)
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